Basic Information
Locus ID:
nbisL1-mrna-24014
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002155F_pilon | 46927 | 62361 | - | nbisL1-mrna-24014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 15,819.42 Da | 47.59 | 137.69 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 35 | 57 | 0.0015 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 68 | 118 | 8.5E-10 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 29 | 143 | 7.94E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 143 | 5.0E-36 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 33 | 51 | 160.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 105 | 138 | 13.0 | - |
| SMART | SM00369 | LRR_typ_2 | 33 | 56 | 4.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 82 | 104 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 105 | 132 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 57 | 81 | 78.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 81 | 99 | 190.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 83 | 104 | 8.166296 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 107 | 129 | 7.350022 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 35 | 56 | 7.1036 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 105 | 118 | 3.0E-8 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 84 | 97 | 3.0E-8 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg41083 |
| Apiaceae | Apium graveolens | 1 | Ag7G02197 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2182.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G30055 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0059, Ceq01G0127 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013970 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G007550 |
| Poaceae | Zea mays | 2 | Zm00001eb046230_P001, Zm00001eb227890_P001 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24014 |