Basic Information
Locus ID:
nbisL1-mrna-23975
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 18638490 | 18644310 | + | nbisL1-mrna-23975 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 78,663.09 Da | 44.04 | 87.31 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 426 | 697 | 3.1177E-89 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 424 | 694 | 2.3E-46 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 46 | 85 | 4.4E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 253 | 7.65E-34 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 395 | 694 | 1.13E-77 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 386 | 497 | 6.0E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 498 | 721 | 5.4E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 43 | 271 | 9.6E-44 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 420 | 697 | 38.590778 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 426 | 449 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 302 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22130.1 | STRUBBELIG-receptor family 8. | 0 |
| RefSeq | XP_021637699.1 | protein STRUBBELIG-RECEPTOR FAMILY 8-like [Hevea brasiliensis] | 0 |
| Q6R2J8 | Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana OX=3702 GN=SRF8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KHE3 | Uncharacterized protein MANES_16G003200 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology