Basic Information
Locus ID:
nbisL1-mrna-2393
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
CPK17
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 20256207 | 20262105 | - | nbisL1-mrna-2393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 93,129.95 Da | 40.43 | 82.71 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 737 | 796 | 2.06005E-18 | IPR002048 |
| CDD | cd00590 | RRM_SF | 233 | 304 | 1.63928E-16 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 233 | 302 | 2.7E-13 | IPR000504 |
| Pfam | PF13499 | EF-hand domain pair | 737 | 797 | 4.0E-11 | IPR002048 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 386 | 485 | 9.0E-10 | IPR025558 |
| Pfam | PF00069 | Protein kinase domain | 78 | 183 | 1.5E-20 | IPR000719 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 227 | 316 | 5.7E-20 | IPR035979 |
| SUPERFAMILY | SSF47473 | EF-hand | 729 | 821 | 3.65E-27 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 63 | 183 | 3.96E-26 | IPR011009 |
| SUPERFAMILY | SSF56219 | DNase I-like | 602 | 691 | 3.04E-9 | IPR036691 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 88 | 184 | 2.8E-24 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 222 | 339 | 2.0E-17 | IPR012677 |
| Gene3D | G3DSA:1.10.238.10 | - | 730 | 798 | 1.6E-37 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 707 | 821 | 1.6E-37 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 547 | 699 | 5.0E-10 | IPR036691 |
| SMART | SM00054 | efh_1 | 772 | 800 | 7.6E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 736 | 764 | 1.3E-5 | IPR002048 |
| SMART | SM00360 | rrm1_1 | 232 | 304 | 2.3E-18 | IPR000504 |
| SMART | SM00220 | serkin_6 | 64 | 232 | 6.9E-10 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 314 | 15.114206 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 732 | 767 | 14.150764 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 768 | 803 | 12.225983 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 804 | 822 | 8.794848 | IPR002048 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 231 | 308 | 13.754213 | IPR000504 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 124 | 136 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 745 | 757 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 781 | 793 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 51 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12180.1 | calcium-dependent protein kinase 17. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_022729866.1 | calcium-dependent protein kinase 34-like [Durio zibethinus] | 0 |
| Q9FMP5 | Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana OX=3702 GN=CPK17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2XNZ0 | Calcium-dependent protein kinase 17 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111542pilonHSYRG00165 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 8 | nbisL1-mrna-1048, nbisL1-mrna-10524, nbisL1-mrna-1849 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.11254_chr06_-, STRG.19139_chr07_-, STRG.852_chr01_+ |