Basic Information
Locus ID:
nbisL1-mrna-23919
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002213F_pilon | 303051 | 311626 | - | nbisL1-mrna-23919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 98,957.14 Da | 39.47 | 74.72 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 272 | 7.99743E-60 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 3.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 168 | 1.9E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 821 | 863 | 1.6E-10 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 186 | 224 | 1.9E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 280 | 5.86E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 171 | 329 | 7.7E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 170 | 2.7E-46 | IPR015943 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 3.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 224 | 9.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 265 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 7.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 3.2E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 11.998316 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 95 | 10.469233 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 192 | 227 | 11.840134 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 168 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.253835 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 233 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 168 | 11.510997 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 211 | 225 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 211 | 225 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 73 | 87 | 3.1E-6 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 826 | 15.295392 | IPR026962 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_006377307.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 isoform X1 [Populus trichocarpa] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L2P7 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology