Basic Information
Locus ID:
nbisL1-mrna-23880
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 17552647 | 17553565 | - | nbisL1-mrna-23880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 16,563.74 Da | 55.45 | 81.01 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1 | 100 | 2.4E-9 | IPR001245 |
| Pfam | PF11883 | Domain of unknown function (DUF3403) | 104 | 148 | 3.5E-10 | IPR021820 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 131 | 5.57E-18 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 109 | 3.3E-23 | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65790.1 | receptor kinase 1. An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain. | 0 |
| RefSeq | XP_048231000.1 | - | 0 |
| Q39086 | Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana OX=3702 GN=SD17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IIC6 | Receptor-like serine/threonine-protein kinase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg50583 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30116040 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019425m.g.v1.0 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1618 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9148 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7AG0570250 |
| Poaceae | Oryza coarctata | 1 | Oco09G013380 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG009480 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23866, nbisL1-mrna-23880 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620138 |
| Zosteraceae | Zostera marina | 2 | Zosma03g09360.v3.1, Zosma150g00030.v3.1 |