Basic Information
Locus ID:
nbisL1-mrna-23878
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 17538295 | 17539425 | - | nbisL1-mrna-23878 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 13,803.27 Da | 45.63 | 85.20 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 57 | 119 | 1.2E-9 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 61 | 97 | 2.38E-12 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 17 | 63 | 1.6E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 64 | 126 | 1.1E-11 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 127 | 9.771554 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11340.3 | - | 0 |
| RefSeq | XP_030960871.1 | - | 0 |
| Q9ZT07 | G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana OX=3702 GN=RKS1 PE=3 SV=3 | 0 | |
| TrEMBL | A0A8J4VG18 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah017725 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg25971 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012040, gene:ENSEOMG00000033327 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr26G016300 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-21987, nbisL1-mrna-23878 |