Basic Information
Locus ID:
nbisL1-mrna-23873
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002213F_pilon | 33014 | 36804 | - | nbisL1-mrna-23873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 53,825.88 Da | 32.97 | 88.52 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 27 | 149 | 5.38429E-32 | IPR001480 |
| CDD | cd01098 | PAN_AP_plant | 330 | 413 | 2.17132E-13 | - |
| Pfam | PF00954 | S-locus glycoprotein domain | 219 | 309 | 1.4E-15 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 334 | 400 | 4.1E-14 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 69 | 175 | 8.9E-33 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 70 | 180 | 3.27E-25 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 16 | 146 | 6.1E-22 | IPR036426 |
| SMART | SM00108 | blect_4 | 27 | 149 | 4.7E-37 | IPR001480 |
| SMART | SM00473 | ntp_6 | 335 | 415 | 3.8E-6 | IPR003609 |
| PIRSF | PIRSF002686 | SLG | 2 | 429 | 6.9E-69 | IPR035446 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 334 | 414 | 8.00404 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 21 | 144 | 18.668186 | IPR001480 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11340.2 | - | 0 |
| RefSeq | XP_021661061.1 | G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Hevea brasiliensis] | 0 |
| Q9ZT07 | G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana OX=3702 GN=RKS1 PE=3 SV=3 | 0 | |
| TrEMBL | A0A2C9U839 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_207 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.946 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-23865, nbisL1-mrna-23867, nbisL1-mrna-23869 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.29, add.evm.TU.utg000027l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017399, Maker00017467 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2278 |
| Rhizophoraceae | Rhizophora mangle | 10 | nbisL1-mrna-23221, nbisL1-mrna-23222, nbisL1-mrna-23870 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18316, populus_peu18318, populus_peu18320 ... |