Basic Information
Locus ID:
nbisL1-mrna-23870
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002213F_pilon | 1216 | 4862 | - | nbisL1-mrna-23870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 54,011.35 Da | 30.13 | 78.71 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00053 | EGF | 276 | 305 | 0.00755038 | - |
| CDD | cd00028 | B_lectin | 25 | 148 | 3.23576E-26 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 332 | 380 | 5.7E-8 | IPR003609 |
| Pfam | PF00954 | S-locus glycoprotein domain | 223 | 308 | 1.1E-17 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 67 | 174 | 2.0E-31 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 68 | 179 | 4.71E-24 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 368 | 463 | 7.52E-5 | IPR011009 |
| Gene3D | G3DSA:2.90.10.10 | - | 14 | 145 | 1.6E-20 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 357 | 445 | 1.1E-6 | - |
| SMART | SM00108 | blect_4 | 25 | 148 | 1.2E-31 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 19 | 143 | 17.824211 | IPR001480 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_021661061.1 | G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Hevea brasiliensis] | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A6A6LQ72 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_207 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.946 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-23865, nbisL1-mrna-23867, nbisL1-mrna-23869 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.29, add.evm.TU.utg000027l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017399, Maker00017467 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2278 |
| Rhizophoraceae | Rhizophora mangle | 10 | nbisL1-mrna-23221, nbisL1-mrna-23222, nbisL1-mrna-23870 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18316, populus_peu18318, populus_peu18320 ... |