Basic Information
Locus ID:
nbisL1-mrna-23870
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 17358964 | 17374080 | + | nbisL1-mrna-23870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 131,394.39 Da | 41.10 | 79.19 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 853 | 1119 | 4.20955E-93 | - |
| CDD | cd01098 | PAN_AP_plant | 333 | 412 | 2.01025E-12 | - |
| CDD | cd00028 | B_lectin | 25 | 148 | 2.40869E-27 | IPR001480 |
| CDD | cd01098 | PAN_AP_plant | 710 | 789 | 1.7539E-11 | - |
| Pfam | PF00954 | S-locus glycoprotein domain | 583 | 685 | 4.0E-16 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 710 | 776 | 5.6E-13 | IPR003609 |
| Pfam | PF08276 | PAN-like domain | 333 | 399 | 4.1E-12 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 67 | 174 | 5.2E-32 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 215 | 308 | 3.8E-13 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 457 | 551 | 3.1E-22 | IPR001480 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 849 | 1115 | 2.2E-47 | IPR001245 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 68 | 179 | 6.02E-25 | IPR036426 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 456 | 556 | 2.49E-17 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 830 | 1118 | 4.86E-81 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 820 | 922 | 1.4E-37 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 440 | 586 | 6.6E-8 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 923 | 1123 | 1.0E-56 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 14 | 145 | 3.3E-20 | IPR036426 |
| SMART | SM00108 | blect_4 | 382 | 525 | 5.4E-6 | IPR001480 |
| SMART | SM00108 | blect_4 | 25 | 148 | 2.1E-33 | IPR001480 |
| SMART | SM00473 | ntp_6 | 334 | 414 | 0.0015 | IPR003609 |
| SMART | SM00473 | ntp_6 | 711 | 791 | 2.4E-6 | IPR003609 |
| SMART | SM00220 | serkin_6 | 847 | 1118 | 3.4E-28 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 333 | 415 | 7.963628 | IPR003609 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 710 | 790 | 7.80198 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 19 | 143 | 18.578674 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 847 | 1132 | 38.138493 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 853 | 875 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 968 | 980 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11340.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_021661063.1 | - | 0 |
| Q9ZT07 | G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana OX=3702 GN=RKS1 PE=3 SV=3 | 0 | |
| TrEMBL | A0A6A6LQ52 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_207 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.946 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-23865, nbisL1-mrna-23867, nbisL1-mrna-23869 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.29, add.evm.TU.utg000027l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017399, Maker00017467 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2278 |
| Rhizophoraceae | Rhizophora mangle | 10 | nbisL1-mrna-23221, nbisL1-mrna-23222, nbisL1-mrna-23870 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18316, populus_peu18318, populus_peu18320 ... |