Basic Information
Locus ID:
nbisL1-mrna-23869
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 17336537 | 17340198 | - | nbisL1-mrna-23869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 84,011.48 Da | 43.91 | 88.81 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 19 | 143 | 2.24913E-30 | IPR001480 |
| CDD | cd01098 | PAN_AP_plant | 328 | 407 | 3.20912E-12 | - |
| Pfam | PF00954 | S-locus glycoprotein domain | 201 | 303 | 4.6E-14 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 328 | 394 | 6.0E-13 | IPR003609 |
| Pfam | PF00069 | Protein kinase domain | 539 | 702 | 2.8E-34 | IPR000719 |
| Pfam | PF01453 | D-mannose binding lectin | 61 | 169 | 3.6E-31 | IPR001480 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 522 | 704 | 4.72E-56 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 62 | 174 | 1.57E-22 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 613 | 707 | 4.2E-25 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 8 | 140 | 1.9E-20 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 510 | 612 | 2.2E-38 | - |
| SMART | SM00108 | blect_4 | 19 | 143 | 3.8E-36 | IPR001480 |
| SMART | SM00473 | ntp_6 | 329 | 409 | 1.6E-6 | IPR003609 |
| SMART | SM00220 | serkin_6 | 537 | 733 | 2.1E-10 | IPR000719 |
| PIRSF | PIRSF000641 | SRK | 1 | 706 | 1.1E-193 | IPR024171 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 328 | 408 | 7.973732 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 13 | 138 | 18.118324 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 537 | 740 | 31.128027 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 658 | 670 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 543 | 565 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_021661061.1 | G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Hevea brasiliensis] | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A2C9U816 | Receptor-like serine/threonine-protein kinase OS=Manihot esculenta OX=3983 GN=MANES_16G018800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_207 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.946 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-23865, nbisL1-mrna-23867, nbisL1-mrna-23869 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.29, add.evm.TU.utg000027l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017399, Maker00017467 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2278 |
| Rhizophoraceae | Rhizophora mangle | 10 | nbisL1-mrna-23221, nbisL1-mrna-23222, nbisL1-mrna-23870 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18316, populus_peu18318, populus_peu18320 ... |