Basic Information
Locus ID:
nbisL1-mrna-23867
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 17321414 | 17328937 | + | nbisL1-mrna-23867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 62,714.92 Da | 41.94 | 79.93 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 289 | 367 | 3.17562E-12 | - |
| Pfam | PF08276 | PAN-like domain | 288 | 354 | 1.5E-11 | IPR003609 |
| Pfam | PF00954 | S-locus glycoprotein domain | 173 | 263 | 1.1E-13 | IPR000858 |
| Pfam | PF00069 | Protein kinase domain | 474 | 550 | 1.4E-14 | IPR000719 |
| Pfam | PF01453 | D-mannose binding lectin | 39 | 129 | 2.8E-20 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 41 | 134 | 6.02E-16 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 475 | 550 | 1.35E-23 | IPR011009 |
| Gene3D | G3DSA:2.90.10.30 | - | 34 | 132 | 7.9E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 467 | 550 | 2.1E-24 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 333 | 550 | 17.290842 | IPR000719 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 288 | 370 | 8.387955 | IPR003609 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 506 | 518 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.3 | - | 0 |
| RefSeq | XP_021599032.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 isoform X2 [Manihot esculenta] | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A6A6LYC2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_207 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.946 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-23865, nbisL1-mrna-23867, nbisL1-mrna-23869 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.29, add.evm.TU.utg000027l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017399, Maker00017467 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2278 |
| Rhizophoraceae | Rhizophora mangle | 10 | nbisL1-mrna-23221, nbisL1-mrna-23222, nbisL1-mrna-23870 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18316, populus_peu18318, populus_peu18320 ... |