Basic Information
Locus ID:
nbisL1-mrna-23865
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 17313530 | 17316290 | + | nbisL1-mrna-23865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 81,007.71 Da | 32.35 | 83.07 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 369 | 448 | 2.36383E-13 | - |
| CDD | cd00028 | B_lectin | 61 | 184 | 3.49027E-31 | IPR001480 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 554 | 711 | 5.8E-36 | IPR001245 |
| Pfam | PF00954 | S-locus glycoprotein domain | 251 | 343 | 1.5E-15 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 103 | 210 | 3.7E-32 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 369 | 435 | 4.5E-12 | IPR003609 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 535 | 717 | 4.45E-57 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 104 | 215 | 3.14E-25 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 526 | 627 | 6.9E-39 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 50 | 182 | 9.7E-22 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 628 | 717 | 4.2E-25 | - |
| SMART | SM00108 | blect_4 | 61 | 184 | 1.3E-36 | IPR001480 |
| SMART | SM00473 | ntp_6 | 370 | 450 | 1.0E-4 | IPR003609 |
| SMART | SM00220 | serkin_6 | 552 | 715 | 4.4E-9 | IPR000719 |
| PIRSF | PIRSF000641 | SRK | 33 | 717 | 2.2E-195 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 55 | 179 | 18.361286 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 369 | 452 | 7.913114 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 552 | 717 | 32.527294 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 673 | 685 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 558 | 580 | - | IPR017441 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11410.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_021661061.1 | G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Hevea brasiliensis] | 0 |
| Q9LPZ3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana OX=3702 GN=At1g11410 PE=3 SV=3 | 0 | |
| TrEMBL | A0A2C9U816 | Receptor-like serine/threonine-protein kinase OS=Manihot esculenta OX=3983 GN=MANES_16G018800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_207 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.946 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-23865, nbisL1-mrna-23867, nbisL1-mrna-23869 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.29, add.evm.TU.utg000027l.30 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017399, Maker00017467 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2278 |
| Rhizophoraceae | Rhizophora mangle | 10 | nbisL1-mrna-23221, nbisL1-mrna-23222, nbisL1-mrna-23870 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18316, populus_peu18318, populus_peu18320 ... |