Basic Information
Locus ID:
nbisL1-mrna-23846
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 17073730 | 17095659 | + | nbisL1-mrna-23846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 54,330.73 Da | 62.60 | 78.68 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21440.1 | MYB-like 102. Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family. | 0 |
| RefSeq | XP_011001151.1 | PREDICTED: protein ODORANT1 [Populus euphratica] | 0 |
| Q9LDR8 | Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MPK6 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2033 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.879 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-23601, nbisL1-mrna-23846, nbisL1-mrna-3477 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.31 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004632 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-25168 |