Basic Information
Locus ID:
nbisL1-mrna-2383
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8687138 | 8690114 | + | nbisL1-mrna-2383 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 46,543.14 Da | 30.51 | 77.10 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 174 | 2.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 295 | 0.0073 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 108 | 128 | 1.9E-8 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 334 | 0.0077 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 136 | 423 | 1.28E-47 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 105 | 129 | 3.01E-7 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 129 | 221 | 2.6E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 222 | 430 | 9.3E-31 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 82 | 128 | 3.4E-6 | - |
| Gene3D | G3DSA:3.30.1370.210 | - | 14 | 63 | 2.3E-5 | - |
| SMART | SM00320 | WD40_4 | 385 | 422 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 295 | 4.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 251 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 174 | 5.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 335 | 4.0E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 27 | 52 | 0.57 | IPR000571 |
| SMART | SM00320 | WD40_4 | 341 | 382 | 7.2 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 106 | 130 | 3.8E-6 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 142 | 174 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 142 | 183 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 9.845036 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 304 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 104 | 131 | 15.516052 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 298 | 9.361965 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 161 | 175 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 282 | 296 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 322 | 336 | 3.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 76 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021615892.1 | zinc finger CCCH domain-containing protein 48 isoform X2 [Manihot esculenta] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M7Y4 | Uncharacterized protein MANES_06G142500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology