Basic Information
Locus ID:
nbisL1-mrna-23809
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 16660590 | 16667289 | + | nbisL1-mrna-23809 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 102,268.54 Da | 40.21 | 80.52 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 224 | 7.01959E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 92 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 98 | 134 | 1.1E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 176 | 3.3E-6 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 783 | 926 | 2.9E-51 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 261 | 1.28E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 323 | 1.1E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 134 | 5.7E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 137 | 176 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 217 | 0.73 | IPR001680 |
| SMART | SM00320 | WD40_4 | 9 | 50 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 92 | 8.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 95 | 134 | 1.7E-11 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 102 | 139 | 13.553762 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 18 | 59 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 144 | 185 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 60 | 101 | 15.755108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 18 | 59 | 9.704691 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 60 | 94 | 12.393768 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 102 | 143 | 17.459436 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 144 | 179 | 11.840134 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 163 | 177 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 121 | 135 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 121 | 135 | 1.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 79 | 93 | 1.7E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 163 | 177 | 1.7E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 931 | 16.352768 | IPR026962 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_024436895.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 isoform X2 [Populus trichocarpa] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L2P7 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology