Basic Information
Locus ID:
nbisL1-mrna-23801
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002105F_pilon | 170358 | 178598 | + | nbisL1-mrna-23801 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 108,927.51 Da | 36.30 | 79.15 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 627 | 667 | 7.8136E-18 | - |
| Pfam | PF00628 | PHD-finger | 628 | 669 | 2.9E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 393 | 444 | 9.2E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 561 | 611 | 1.7E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 709 | 767 | 2.88E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 613 | 670 | 8.02E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 711 | 772 | 1.1E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 614 | 692 | 4.8E-20 | IPR013083 |
| SMART | SM00249 | PHD_3 | 627 | 668 | 1.5E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 714 | 770 | 0.11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 625 | 670 | 10.5669 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 628 | 667 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 523 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021674551.1 | uncharacterized protein LOC110660522 [Hevea brasiliensis] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9V1E1 | PHD-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_11G153000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology