Basic Information
Locus ID:
nbisL1-mrna-23799
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002105F_pilon | 149396 | 156125 | - | nbisL1-mrna-23799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 98,974.45 Da | 60.41 | 66.82 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 822 | 861 | 2.61665E-17 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 820 | 867 | 1.1E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 809 | 868 | 4.29E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 807 | 873 | 1.1E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 823 | 861 | 10.084539 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 347 | - | - |
| Coils | Coil | Coil | 751 | 778 | - | - |
| Coils | Coil | Coil | 233 | 260 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021658463.1 | uncharacterized protein LOC110648515 isoform X3 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2C9V1P9 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_11G153300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology