Basic Information
Locus ID:
nbisL1-mrna-23779
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002188F_pilon | 418035 | 424942 | - | nbisL1-mrna-23779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 131,026.87 Da | 34.02 | 74.99 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03703 | aeIF5B_II | 944 | 1047 | 8.15877E-48 | - |
| CDD | cd01887 | IF2_eIF5B | 721 | 931 | 1.99307E-84 | - |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 722 | 928 | 4.9E-34 | IPR000795 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 715 | 1004 | 1.51E-62 | IPR027417 |
| SUPERFAMILY | SSF50447 | Translation proteins | 1089 | 1190 | 1.45E-15 | IPR009000 |
| Gene3D | G3DSA:3.40.50.300 | - | 712 | 940 | 3.0E-72 | IPR027417 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 941 | 1058 | 1.3E-46 | - |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 1085 | 1191 | 2.6E-38 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 723 | 847 | 6.7E-16 | IPR005225 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 718 | 934 | 43.701508 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 838 | 847 | 3.8E-7 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 722 | 735 | 3.8E-7 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 802 | 813 | 3.8E-7 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 786 | 796 | 3.8E-7 | IPR000795 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 637 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 338 | - | - |
| Coils | Coil | Coil | 74 | 94 | - | - |
| Coils | Coil | Coil | 397 | 436 | - | - |
| Coils | Coil | Coil | 469 | 503 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76810.1 | eukaryotic translation initiation factor 2 (eIF-2) family protein. | 0 |
| RefSeq | XP_021660503.1 | eukaryotic translation initiation factor 5B [Hevea brasiliensis] | 0 |
| Q10251 | Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC56F8.03 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JHH8 | Eukaryotic translation initiation factor 5B OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6070 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15301, gene_245 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah003421, Ah018262, Ah018421 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_3g050350, BVRB_7g173810, BVRB_9g202210 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg14893, Sbi_jg28723, Sbi_jg2920, Sbi_jg31007 ... |
| Amaranthaceae | Salicornia europaea | 7 | Seu_jg22981, Seu_jg22982, Seu_jg26226, Seu_jg6833 ... |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00004375, GOSA_00004376, GOSA_00017916 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01135, Sgl06220 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000003077, gene:ENSEOMG00000021883 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0006900, CQ.Regalona.r1.3AG0006930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30037970 |
| Apiaceae | Apium graveolens | 6 | Ag3G00748, Ag3G00749, Ag3G01911, Ag4G02445, Ag4G02446 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G000450, scaffold033353G000040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720357, gene-LOC103721040 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1583.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G06402, Ftri12G27292, Ftri9G10744 |
| Brassicaceae | Arabidopsis thaliana | 5 | AT1G21160.1, AT1G76720.1, AT1G76810.1, AT1G76820.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10006634m.g.v1.0, Thhalv10018018m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g31970.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g016020.2N, BniB02g016030.2N, BniB03g009000.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1632 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1673 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g04590 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0041s00031.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g24390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.718 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00011481, Pov_00011596, Pov_00011597, Pov_00011598 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10385, Lb3G16650 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.3560, BH05.1205, BH05.3558, CH01.2697, CH05.1503 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0360980, gene-QOZ80_5AG0391570 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0094710.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015006, gene-QYE76_042706 |
| Poaceae | Oryza coarctata | 3 | Oco02G013470, Oco09G018380, Oco10G018310 |
| Poaceae | Oryza sativa | 4 | LOC_Os01g40150.1, LOC_Os01g40170.1, LOC_Os05g51500.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_08G078500, gene-BS78_08G078600 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505892, Pt_Chr0703558 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G016380, Chr04G015670, Chr04G024780, Chr06G016320 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G740900, Tel1E01G741100, Tel1E01G742100 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG064300, gene_TRIDC1BG073510 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G438600.2, TraesCS1B02G472500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb345280_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13527, nbis-gene-48615 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25096, Zma_g27484 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.629, evm.TU.LG03.129, evm.TU.LG03.17 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g14760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1614 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19623, nbisL1-mrna-8731 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-402, nbisL1-mrna-8952 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-15078, nbisL1-mrna-15079, nbisL1-mrna-8068 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.50, evm.TU.utg000023l.36 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003101 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19721, nbisL1-mrna-9392 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23779 |
| Salicaceae | Populus euphratica | 5 | populus_peu00417, populus_peu18706, populus_peu18723 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636476 |
| Solanaceae | Solanum chilense | 2 | SOLCI001496400, SOLCI003795700 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107014299, gene-LOC107014401, gene-LOC107017076 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5392_chr02_+, gene_17626 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1943 |
| Zosteraceae | Zostera marina | 4 | Zosma01g35560.v3.1, Zosma04g20870.v3.1, Zosma277g00050.v3.1 ... |