Basic Information
Locus ID:
nbisL1-mrna-23721
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002188F_pilon | 68280 | 73187 | - | nbisL1-mrna-23721 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 39,517.91 Da | 48.34 | 68.50 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 273 | 336 | 5.16624E-19 | - |
| CDD | cd16872 | ARID_HMGB9-like | 63 | 148 | 2.7451E-50 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 65 | 148 | 6.7E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 276 | 340 | 2.1E-9 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 59 | 156 | 1.44E-30 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 270 | 343 | 1.44E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 53 | 161 | 1.6E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 255 | 346 | 2.4E-16 | IPR036910 |
| SMART | SM00398 | hmgende2 | 272 | 341 | 6.1E-11 | IPR009071 |
| SMART | SM01014 | ARID_2 | 58 | 148 | 3.4E-30 | - |
| SMART | SM00501 | bright_3 | 62 | 153 | 1.9E-35 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 61 | 152 | 26.93576 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 273 | 340 | 12.494254 | IPR009071 |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 324 | 344 | 9.7E-5 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 305 | 324 | 9.7E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 274 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006378007.1 | high mobility group B protein 10 isoform X1 [Populus trichocarpa] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KIB9 | High mobility group family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology