halophFGD

Basic Information

Locus ID: nbisL1-mrna-23703

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: Serine threonine-protein kinase endoribonuclease

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
001595F_pilon	344086	344876	-	nbisL1-mrna-23703

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.64	15,078.37 Da	36.56	81.83	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06479	Ribonuclease 2-5A	76	130	2.8E-5	IPR010513
Gene3D	G3DSA:1.20.1440.180	KEN domain	73	131	3.3E-6	IPR038357
ProSiteProfiles	PS51392	KEN domain profile.	73	131	11.32023	IPR010513

Gene Ontology

Biological Process:

GO:0006397 (mRNA processing)

Molecular Function:

GO:0004540 (RNA nuclease activity)

KEGG Pathway

KO Term:

K08852 (serine/threonine-protein kinase/endoribonuclease IRE1 [EC:2.7.11.1 3.1.26.-])

Pathway:

ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) map04210 (Apoptosis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G17520.1	Endoribonuclease/protein kinase IRE1-like. Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants.
RefSeq	XP_043814931.1	serine/threonine-protein kinase/endoribonuclease IRE1a isoform X3 [Manihot esculenta]
Swiss-Prot	Q9C5S2	Serine/threonine-protein kinase/endoribonuclease IRE1a OS=Arabidopsis thaliana OX=3702 GN=IRE1A PE=1 SV=1
TrEMBL	A0A2P2KIV2	non-specific serine/threonine protein kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0614, Ceq01G0618
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10412
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-11638
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000011l.560
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-23115
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23703