Basic Information
Locus ID:
nbisL1-mrna-237
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 1862274 | 1870326 | - | nbisL1-mrna-237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 113,234.74 Da | 31.70 | 80.10 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 346 | 2.08907E-173 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 903 | 1008 | 1.0E-10 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 388 | 479 | 5.4E-19 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 382 | 1.6E-87 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 609 | 821 | 1.1E-53 | IPR011682 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 383 | 3.42E-104 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 496 | 1011 | 1.51E-145 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 386 | 481 | 1.18E-25 | IPR028995 |
| Gene3D | G3DSA:2.70.98.30 | - | 609 | 869 | 2.9E-102 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 351 | 429 | 1.6E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 483 | 608 | 1.5E-23 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 430 | 482 | 3.5E-19 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 350 | 1.8E-113 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 893 | 1011 | 2.0E-35 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 387 | 461 | 9.5E-19 | IPR015341 |
| Coils | Coil | Coil | 950 | 970 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_012065851.1 | alpha-mannosidase [Jatropha curcas] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067LFA1 | Alpha-mannosidase OS=Jatropha curcas OX=180498 GN=JCGZ_22737 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology