Basic Information
Locus ID:
nbisL1-mrna-2368
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8554987 | 8559188 | - | nbisL1-mrna-2368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 55,383.80 Da | 43.34 | 80.94 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 2.5E-11 | - |
| Pfam | PF00023 | Ankyrin repeat | 221 | 246 | 8.7E-5 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 207 | 1.1E-4 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 310 | 375 | 1.16E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 1.47E-46 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 145 | 270 | 4.1E-22 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 144 | 2.9E-29 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 387 | 1.1E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 2.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.81 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 7.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.47 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.2E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.667035 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 11.3005 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.726336 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.83795 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.686208 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.68292 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 10.68342 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 10.471169 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 246 | 10.71288 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 484 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021648639.1 | E3 ubiquitin-protein ligase XBAT33-like [Hevea brasiliensis] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LD08 | Uncharacterized protein MANES_14G027900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology