Basic Information
Locus ID:
nbisL1-mrna-23670
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
NAC domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 14169251 | 14177752 | - | nbisL1-mrna-23670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 57,380.04 Da | 56.85 | 70.20 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 97 | 235 | 1.3E-21 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 81 | 254 | 1.96E-38 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 105 | 259 | 9.6E-31 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 96 | 254 | 31.659538 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 407 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_021649926.1 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 [Hevea brasiliensis] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JQB8 | NAC transcription factors 7 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology