Basic Information
Locus ID:
nbisL1-mrna-23649
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
(-)-germacrene D synthase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001786F_pilon | 218095 | 263206 | + | nbisL1-mrna-23649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 27,340.84 Da | 34.64 | 71.82 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01397 | Terpene synthase, N-terminal domain | 80 | 144 | 1.4E-16 | IPR001906 |
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 80 | 170 | 9.42E-29 | IPR008930 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 170 | 189 | 6.2E-41 | IPR008949 |
| Gene3D | G3DSA:1.50.10.130 | - | 79 | 169 | 6.2E-41 | IPR036965 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48820.1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein. | 0 |
| RefSeq | XP_037497671.1 | LOW QUALITY PROTEIN: alpha-copaene synthase [Jatropha curcas] | 0 |
| Q6Q3H3 | (-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067KVJ6 | (-)-germacrene D synthase-like OS=Jatropha curcas OX=180498 GN=JCGZ_00780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2449 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12345 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-22134, nbisL1-mrna-22135, nbisL1-mrna-22804 ... |