Basic Information
Locus ID:
nbisL1-mrna-23643
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 13883132 | 13888129 | + | nbisL1-mrna-23643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 42,116.88 Da | 56.16 | 78.73 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 353 | 395 | 8.45054E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.47503E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 164 | 213 | 1.62118E-29 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.4E-18 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 276 | 331 | 2.1E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 357 | 392 | 8.7E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 173 | 208 | 1.7E-13 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 8.98E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 272 | 338 | 1.83E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 156 | 214 | 2.1E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 338 | 399 | 8.93E-15 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 8.7E-28 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 349 | 396 | 3.7E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 267 | 332 | 3.0E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 163 | 213 | 2.3E-21 | - |
| SMART | SM00165 | uba_6 | 357 | 394 | 1.1E-8 | IPR015940 |
| SMART | SM00727 | CBM | 274 | 317 | 3.6E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.8E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 170 | 210 | 1.8E-4 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 400 | 2.5E-117 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.021688 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 354 | 395 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 168 | 211 | 12.354117 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 351 | 367 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 383 | 398 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 302 | 324 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 368 | 382 | 1.7E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 147 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021637897.1 | ubiquitin receptor RAD23c-like [Hevea brasiliensis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MDW7 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology