Basic Information
Locus ID:
nbisL1-mrna-23622
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001074F_pilon | 378049 | 382008 | - | nbisL1-mrna-23622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 110,015.56 Da | 36.55 | 105.34 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 68 | 6.1E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 144 | 203 | 3.3E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 691 | 916 | 7.6E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 680 | 967 | 1.89E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 386 | 597 | 1.53E-42 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 78 | 433 | 7.53E-63 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 187 | 4.9E-44 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 265 | 335 | 9.4E-17 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 776 | 993 | 2.2E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 264 | 1.8E-17 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 672 | 775 | 3.9E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 336 | 620 | 1.5E-73 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 288 | 312 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 551 | 574 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 143 | 167 | 48.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 688 | 990 | 2.7E-40 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 95 | 119 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 503 | 527 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 216 | 240 | 130.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 688 | 970 | 36.908833 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 694 | 724 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 820 | 832 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_011027770.1 | PREDICTED: receptor-like protein kinase HSL1 [Populus euphratica] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IWX1 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology