Basic Information
Locus ID:
nbisL1-mrna-23614
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 13490651 | 13502076 | + | nbisL1-mrna-23614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 134,114.36 Da | 50.54 | 78.68 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 608 | 759 | 2.08218E-27 | - |
| CDD | cd12108 | Hr-like | 260 | 388 | 1.0958E-18 | - |
| CDD | cd12108 | Hr-like | 53 | 125 | 1.28361E-15 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 604 | 760 | 2.4E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 257 | 390 | 1.2E-8 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 971 | 1046 | 8.5E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1099 | 1131 | 2.5E-6 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1037 | 1092 | 1.06E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1099 | 1132 | 5.55E-5 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 964 | 1027 | 1.83E-18 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 51 | 145 | 9.8E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 259 | 405 | 7.8E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 600 | 825 | 7.2E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1095 | 1137 | 1.1E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 1100 | 1155 | 0.0054 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 964 | 1033 | 26.078772 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1036 | 1099 | 30.083912 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_024466172.1 | zinc finger protein BRUTUS isoform X1 [Populus trichocarpa] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K0V3 | Uncharacterized protein LOC105113207 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology