Basic Information
Locus ID:
nbisL1-mrna-23555
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12955783 | 12958407 | - | nbisL1-mrna-23555 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 17,296.74 Da | 40.79 | 65.22 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 55 | 150 | 1.9E-6 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 57 | 152 | 2.11E-15 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 7 | 157 | 2.6E-23 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 157 | 9.149658 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35600.1 | Protein kinase superfamily protein. plant-type connexin (gap junction-type protein), a component of plasmodesmata | 0 |
| RefSeq | XP_021691429.1 | probable serine/threonine-protein kinase PIX13 [Hevea brasiliensis] | 0 |
| P27450 | Probable serine/threonine-protein kinase CST OS=Arabidopsis thaliana OX=3702 GN=CST PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A6MKF7 | Protein kinase domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_034888 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg55190 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30239250 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00020315, Pov_00020316, Pov_00020317 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g12300.1 |
| Poaceae | Zea mays | 1 | Zm00001eb031180_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-52105, nbis-gene-5555 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-167, nbisL1-mrna-23555 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015265 |