Basic Information
Locus ID:
nbisL1-mrna-23553
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5238191 | 5243449 | + | nbisL1-mrna-23553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 85,215.03 Da | 51.33 | 80.39 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 13 | 166 | 3.33731E-60 | - |
| Pfam | PF00582 | Universal stress protein family | 13 | 155 | 1.7E-6 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 461 | 712 | 6.8E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 440 | 716 | 2.43E-70 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 12 | 164 | 8.2E-11 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 11 | 165 | 1.8E-12 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 438 | 530 | 1.7E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 531 | 732 | 2.3E-49 | - |
| SMART | SM00220 | serkin_6 | 458 | 718 | 5.0E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 458 | 721 | 35.778114 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 576 | 588 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 773 | - | - |
| Coils | Coil | Coil | 384 | 420 | - | - |
| Coils | Coil | Coil | 324 | 344 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24370.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_021275534.1 | U-box domain-containing protein 35-like [Herrania umbratica] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2LP70 | Protein kinase domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS260639 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology