Basic Information
Locus ID:
nbisL1-mrna-23550
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
(-)-alpha-pinene synthase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001800F_pilon | 138473 | 180005 | - | nbisL1-mrna-23550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 26,896.42 Da | 48.79 | 103.99 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 77 | 120 | 2.67E-10 | IPR008930 |
| Gene3D | G3DSA:1.50.10.130 | - | 52 | 146 | 1.6E-10 | IPR036965 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_037497671.1 | LOW QUALITY PROTEIN: alpha-copaene synthase [Jatropha curcas] | 0 |
| B9S9Z3 | Alpha-copaene synthase OS=Ricinus communis OX=3988 GN=TPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KD78 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2449 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12345 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-22134, nbisL1-mrna-22135, nbisL1-mrna-22804 ... |