Basic Information
Locus ID:
nbisL1-mrna-23543
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12825102 | 12828512 | - | nbisL1-mrna-23543 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 69,314.27 Da | 42.23 | 101.54 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 269 | 311 | 7.30271E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 477 | 515 | 4.5E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 395 | 433 | 1.2E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 265 | 336 | 4.8E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 558 | 597 | 3.3E-4 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 364 | 638 | 2.38E-48 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 261 | 339 | 1.2E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 440 | 543 | 3.2E-25 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 344 | 1.7E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 355 | 439 | 5.2E-12 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 544 | 643 | 1.7E-16 | IPR011989 |
| SMART | SM00185 | arm_5 | 435 | 475 | 0.17 | IPR000225 |
| SMART | SM00185 | arm_5 | 517 | 557 | 7.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 600 | 640 | 320.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 558 | 598 | 5.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 476 | 516 | 6.9E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 394 | 434 | 2.9E-5 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 268 | 331 | 1.2E-35 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 528 | 570 | 8.837399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 487 | 529 | 8.9774 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 405 | 447 | 13.4574 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 446 | 488 | 10.0274 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 264 | 338 | 46.202858 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 236 | - | - |
| Coils | Coil | Coil | 145 | 165 | - | - |
| Coils | Coil | Coil | 624 | 644 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23030.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_012072200.1 | U-box domain-containing protein 11 [Jatropha curcas] | 0 |
| Q8GUG9 | U-box domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUB11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2Q5U4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35008, jg5192, jg7314 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18581 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025332 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g144830 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12914, Sbi_jg52950, Sbi_jg52951 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8905 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009008 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl31132, Sgl32514, Sgl32515, Sgl36486, Sgl37776, Sgl37777 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002705, gene:ENSEOMG00000003094 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012350, CQ.Regalona.r1.6BG0012950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30217060 |
| Apiaceae | Apium graveolens | 4 | Ag11G03910, Ag5G01966, Ag6G00551, Ag8G01841 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G010220 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695610 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.500.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G03791, Ftri8G13159 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G23030.1, AT1G71020.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007104m.g.v1.0, Thhalv10018269m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g20480.v2.2, Sp5g26190.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g030610.2N, BniB03g048920.2N, BniB04g038270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0910 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0986 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g08420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1412 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021569 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01465, Lb2G13229 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3353, BH07.3179, CH07.3239 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0144450, gene-QOZ80_2BG0199920 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0612510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_025079 |
| Poaceae | Oryza coarctata | 2 | Oco03G020820, Oco04G021440 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g49950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G267000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203429 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G020900, Chr13G005150 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G533800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG044730, gene_TRIDC6BG052360 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G293600.1, TraesCS6B02G324000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb190130_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21941, nbis-gene-21942 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17081 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.827, evm.TU.LG21.485 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g00600 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.162, evm.TU.Scaffold_17_RagTag.829 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23543 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11779, nbisL1-mrna-16846 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17499 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.104, evm.TU.utg000013l.465 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004452, Maker00004586 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10858, nbisL1-mrna-11620 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14209, nbisL1-mrna-2766 |
| Salicaceae | Populus euphratica | 2 | populus_peu07148, populus_peu21130 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613646, gene-LOC132641621 |
| Solanaceae | Solanum chilense | 2 | SOLCI005517900, SOLCI005631600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017697, gene-LOC107020839 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9235_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1243, TC11G1005 |