Basic Information
Locus ID:
nbisL1-mrna-23539
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000021F_pilon | 543842 | 545369 | - | nbisL1-mrna-23539 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 29,381.54 Da | 52.82 | 66.43 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 158 | 199 | 5.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 206 | 8.25E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 235 | 3.7E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 199 | 7.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 200 | 11.235273 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38895.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002314992.2 | E3 ubiquitin-protein ligase At3g02290 isoform X2 [Populus trichocarpa] | 0 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835JTH8 | RING-type domain-containing protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf10G0106300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.522 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26688 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16300 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15839 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.261 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22341 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23539 |
| Salicaceae | Populus euphratica | 1 | populus_peu20875 |