Basic Information
Locus ID:
nbisL1-mrna-23528
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000021F_pilon | 427447 | 431047 | - | nbisL1-mrna-23528 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 45,458.10 Da | 42.09 | 95.93 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 213 | 290 | 1.1E-4 | IPR013187 |
| Pfam | PF00646 | F-box domain | 25 | 56 | 7.4E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 89 | 3.14E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 61 | 8.2E-8 | - |
| SMART | SM00256 | fbox_2 | 25 | 65 | 1.4E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 116 | 296 | 1.3E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 64 | 10.636728 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19940.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_050220799.1 | - | 0 |
| O49421 | F-box protein At4g19940 OS=Arabidopsis thaliana OX=3702 GN=At4g19940 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2P2Q2Z8 | FBA_3 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1496, gene_23374 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G015300, COCNU_07G015310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8264 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1529, evm.TU.LG22.421 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.534, evm.TU.Scaffold_5_RagTag.1577 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-12069, nbisL1-mrna-12143, nbisL1-mrna-12163 ... |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.160 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15516, nbisL1-mrna-23528 |
| Solanaceae | Lycium barbarum | 8 | gene-LOC132600105, gene-LOC132602587, gene-LOC132614123 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000612100, SOLCI004908700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107003485, gene-LOC107004245, gene-LOC107004251 |