Basic Information
Locus ID:
nbisL1-mrna-23527
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12588675 | 12591675 | + | nbisL1-mrna-23527 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 44,443.03 Da | 43.58 | 91.16 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 214 | 232 | 0.062 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 303 | 358 | 8.9E-5 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 77 | 375 | 3.61E-35 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 66 | 383 | 1.5E-64 | IPR015943 |
| SMART | SM00320 | WD40_4 | 108 | 148 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 243 | 0.31 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 334 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 377 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 201 | 0.6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 218 | 252 | 9.40565 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 50 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021595766.1 | SEC12-like protein 2 [Manihot esculenta] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P2KSE6 | SEC12-like protein 2 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology