Basic Information
Locus ID:
nbisL1-mrna-2350
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 2432811 | 2434160 | + | nbisL1-mrna-2350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 49,221.01 Da | 57.22 | 74.92 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 196 | 239 | 5.76041E-18 | - |
| Pfam | PF13639 | Ring finger domain | 196 | 239 | 9.7E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 180 | 245 | 3.53E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 249 | 3.0E-23 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 193 | 246 | 0.0095 | - |
| SMART | SM00184 | ring_2 | 197 | 238 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 239 | 12.887609 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 449 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021636430.1 | RING-H2 finger protein ATL54-like [Hevea brasiliensis] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JII6 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology