Basic Information
Locus ID:
nbisL1-mrna-23489
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12123484 | 12128673 | + | nbisL1-mrna-23489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 55,592.60 Da | 38.11 | 96.61 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 45 | 364 | 3.4E-80 | IPR000490 |
| Pfam | PF07983 | X8 domain | 382 | 453 | 2.1E-17 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 45 | 364 | 1.09E-84 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 375 | 497 | 1.5E-9 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 44 | 370 | 2.1E-115 | - |
| SMART | SM00768 | X8_cls | 381 | 466 | 3.8E-48 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 279 | 292 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01630.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_015580035.1 | glucan endo-1,3-beta-glucosidase 3 [Ricinus communis] | 0 |
| Q9ZU91 | Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2 | 0 | |
| TrEMBL | B9SP53 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology