Basic Information
Locus ID:
nbisL1-mrna-23477
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12007650 | 12010874 | + | nbisL1-mrna-23477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 63,922.17 Da | 40.38 | 71.86 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 394 | 416 | 1.4E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 359 | 383 | 1.3E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 353 | 387 | 1.07E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 388 | 422 | 1.49E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 389 | 422 | 1.4E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 351 | 388 | 1.9E-13 | - |
| SMART | SM00547 | zf_4 | 361 | 385 | 5.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 394 | 418 | 5.0E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 392 | 421 | 9.551712 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 359 | 388 | 9.698511 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 396 | 415 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 363 | 382 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 445 | - | - |
| Coils | Coil | Coil | 311 | 331 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_024465182.2 | uncharacterized protein LOC7462679 isoform X1 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2K1YS10 | Zinc finger protein VAR3, chloroplastic OS=Populus trichocarpa OX=3694 GN=POPTR_010G107400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology