Basic Information
Locus ID:
nbisL1-mrna-23449
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 11705129 | 11706091 | - | nbisL1-mrna-23449 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 36,706.65 Da | 37.69 | 83.47 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 54 | 89 | 5.5E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 55 | 103 | 1.7E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 41 | 91 | 2.5E-9 | - |
| SMART | SM00256 | fbox_2 | 55 | 95 | 2.1E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 49 | 95 | 10.901672 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43445.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021627125.1 | - | 0 |
| TrEMBL | A0A2C9V1A2 | F-box domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_11G148800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21930, jg21931 |
| Apiaceae | Apium graveolens | 5 | Ag2G00184, Ag4G00712, Ag5G00094, Ag6G00932, Ag6G00934 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00005860, Pov_00005862, Pov_00005863, Pov_00005864 ... |
| Poaceae | Echinochloa crus-galli | 1 | AH05.4160 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.746, evm.TU.Scaffold_17_RagTag.806 |
| Rhizophoraceae | Carallia pectinifolia | 11 | nbisL1-mrna-22820, nbisL1-mrna-22893, nbisL1-mrna-23439 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20068 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.404 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004309, Maker00004369 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-21034, nbisL1-mrna-21035, nbisL1-mrna-21043 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14243, nbisL1-mrna-14263 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599182 |
| Solanaceae | Solanum chilense | 2 | SOLCI001944300, SOLCI007333400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075087 |