Basic Information
Locus ID:
nbisL1-mrna-23439
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 11629424 | 11631086 | + | nbisL1-mrna-23439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 43,949.46 Da | 31.78 | 87.15 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 191 | 290 | 1.1E-5 | IPR013187 |
| Pfam | PF12937 | F-box-like | 16 | 51 | 5.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 71 | 7.46E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 87 | 2.2E-8 | - |
| SMART | SM00256 | fbox_2 | 17 | 57 | 8.1E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 102 | 325 | 9.9E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 57 | 11.060639 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11620.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_043811747.1 | uncharacterized protein LOC110613298 [Manihot esculenta] | 0 |
| TrEMBL | B9STW7 | F-box domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0545330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21930, jg21931 |
| Apiaceae | Apium graveolens | 5 | Ag2G00184, Ag4G00712, Ag5G00094, Ag6G00932, Ag6G00934 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00005860, Pov_00005862, Pov_00005863, Pov_00005864 ... |
| Poaceae | Echinochloa crus-galli | 1 | AH05.4160 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.746, evm.TU.Scaffold_17_RagTag.806 |
| Rhizophoraceae | Carallia pectinifolia | 11 | nbisL1-mrna-22820, nbisL1-mrna-22893, nbisL1-mrna-23439 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20068 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.404 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004309, Maker00004369 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-21034, nbisL1-mrna-21035, nbisL1-mrna-21043 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14243, nbisL1-mrna-14263 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599182 |
| Solanaceae | Solanum chilense | 2 | SOLCI001944300, SOLCI007333400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075087 |