Basic Information
Locus ID:
nbisL1-mrna-23431
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 8493649 | 8495549 | - | nbisL1-mrna-23431 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 60,260.58 Da | 43.34 | 91.54 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 42 | 2.0E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 60 | 2.62E-12 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 136 | 338 | 2.18E-12 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 44 | 3.5E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 80 | 338 | 1.1E-12 | IPR032675 |
| SMART | SM00256 | fbox_2 | 10 | 49 | 1.7E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 38 | 9.550458 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13570.2 | - | 0 |
| RefSeq | XP_035547747.1 | F-box/LRR-repeat protein At3g03360-like [Juglans regia] | 0 |
| TrEMBL | A0A6P9EYU6 | F-box/LRR-repeat protein At3g03360-like OS=Juglans regia OX=51240 GN=LOC109018596 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology