Basic Information
Locus ID:
nbisL1-mrna-23430
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Tyrosyl-DNA phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002214F_pilon | 260174 | 262505 | - | nbisL1-mrna-23430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 55,903.74 Da | 54.33 | 75.76 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09080 | TDP2 | 230 | 495 | 8.61747E-81 | - |
| Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 233 | 488 | 9.0E-8 | IPR005135 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 120 | 145 | 1.37E-5 | IPR036443 |
| SUPERFAMILY | SSF56219 | DNase I-like | 230 | 495 | 1.44E-27 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 223 | 497 | 1.6E-79 | IPR036691 |
| Gene3D | G3DSA:2.30.30.380 | - | 117 | 154 | 3.9E-6 | - |
| SMART | SM00547 | zf_4 | 122 | 146 | 0.0012 | IPR001876 |
| SMART | SM00547 | zf_4 | 68 | 94 | 0.15 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 124 | 143 | - | IPR001876 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11800.1 | endonuclease/exonuclease/phosphatase family protein. | 0 |
| RefSeq | XP_021646097.1 | tyrosyl-DNA phosphodiesterase 2 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2MZF0 | Endo/exonuclease/phosphatase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20433 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_86 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017508 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g185970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40165, Sbi_jg50120 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1744 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011341, GOSA_00011342 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl46334, Sgl51050 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011037, gene:ENSEOMG00000035131 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0006990, CQ.Regalona.r1.8AG0001570 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30196780, pistato.v30196810, pistato.v30196820 ... |
| Apiaceae | Apium graveolens | 2 | Ag5G01302, Ag8G01080 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G011960, COCNU_14G009720, contig69461970G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707196, gene-LOC103707197 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1168.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G22915 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G11800.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g10430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g006540.2N, BniB02g006560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1618 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1796 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15000 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0488s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1793 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1143 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005939 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22922 |
| Poaceae | Echinochloa crus-galli | 21 | AH01.1539, AH01.2122, AH03.3128, AH03.3129, BH01.1740 ... |
| Poaceae | Eleusine coracana subsp. coracana | 11 | gene-QOZ80_2AG0122960, gene-QOZ80_2BG0179150 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0318330.1, HORVU.MOREX.r3.6HG0567060.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020756, gene-QYE76_052711 |
| Poaceae | Oryza coarctata | 5 | Oco14G008820, Oco19G003780, Oco20G003620, Oco23G005660 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os07g32610.2, LOC_Os10g26164.1, LOC_Os12g22620.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G172300, gene-BS78_01G245700 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0104213, Pt_Chr0105761, Pt_Chr0202450, Pt_Chr0202470 ... |
| Poaceae | Sporobolus alterniflorus | 14 | Chr01G010540, Chr09G008600, Chr09G008610, Chr09G008620 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G768500, Tel6E01G294900, Tel7E01G811800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG025190 |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G372500.1, TraesCS1A02G372600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb043220_P002, Zm00001eb048580_P002 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-27866, nbis-gene-38338, nbis-gene-38340 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13188 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1895, evm.TU.LG14.1082 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.50 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29773 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5440 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20777 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.35 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015359 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6058 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23430 |
| Salicaceae | Populus euphratica | 1 | populus_peu10361 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606312 |
| Solanaceae | Solanum chilense | 1 | SOLCI002134900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009074 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18470_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1633 |
| Zosteraceae | Zostera marina | 1 | Zosma01g08160.v3.1 |