Basic Information
Locus ID:
nbisL1-mrna-23410
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PHD finger protein MALE STERILITY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 11286042 | 11288511 | - | nbisL1-mrna-23410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 75,373.54 Da | 39.08 | 84.45 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 605 | 650 | 4.34793E-24 | - |
| Pfam | PF00628 | PHD-finger | 606 | 652 | 3.6E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 602 | 653 | 3.32E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 594 | 654 | 4.5E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 607 | 651 | 1.0E-6 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 606 | 650 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | XP_021600002.1 | PHD finger protein MALE STERILITY 1 [Manihot esculenta] | 0 |
| Q9FMS5 | PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 SV=1 | 0 | |
| TrEMBL | B9S7E3 | DNA binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0778080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology