Basic Information
Locus ID:
nbisL1-mrna-23403
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 9444926 | 9445993 | - | nbisL1-mrna-23403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 39,439.18 Da | 31.99 | 75.75 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 168 | 202 | 9.4E-8 | IPR006652 |
| Pfam | PF13964 | Kelch motif | 108 | 155 | 2.6E-8 | - |
| Pfam | PF07646 | Kelch motif | 212 | 251 | 4.6E-5 | IPR011498 |
| SUPERFAMILY | SSF117281 | Kelch motif | 80 | 338 | 3.66E-38 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 50 | 1.14E-5 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 11 | 280 | 3.4E-38 | IPR015915 |
| SMART | SM00612 | kelc_smart | 118 | 167 | 0.011 | IPR006652 |
| SMART | SM00612 | kelc_smart | 169 | 216 | 4.2E-7 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15670.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_002517518.1 | F-box/kelch-repeat protein At1g80440 [Ricinus communis] | 0 |
| Q9LMR5 | F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana OX=3702 GN=At1g15670 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2ZUE6 | F-box domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_002192 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology