Basic Information
Locus ID:
nbisL1-mrna-23326
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 11163283 | 11163903 | + | nbisL1-mrna-23326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 22,791.62 Da | 30.36 | 81.84 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 34 | 68 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 74 | 108 | 5.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 198 | 2.96E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 205 | 1.7E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 72 | 109 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 156 | 48.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 32 | 69 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 159 | 196 | 23.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 39 | 78 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 39 | 71 | 8.861059 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 79 | 108 | 8.536777 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 56 | 70 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_022888323.1 | zinc finger CCCH domain-containing protein 48-like isoform X1 [Olea europaea var. sylvestris] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8S0V1W1 | Zinc finger CCCH domain-containing 48 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A107971 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology