Basic Information
Locus ID:
nbisL1-mrna-23325
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 11162652 | 11163242 | + | nbisL1-mrna-23325 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 21,227.88 Da | 49.63 | 68.67 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 102 | 188 | 3.15E-11 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 16 | 65 | 4.1E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 86 | 189 | 9.4E-10 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 29 | 54 | 0.003 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 73 | 100 | 0.0031 | IPR000571 |
| SMART | SM00320 | WD40_4 | 107 | 146 | 1.6E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 146 | 10.23196 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 29 | 55 | 11.140732 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 73 | 101 | 12.708712 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 155 | 12.947979 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_028078030.1 | zinc finger CCCH domain-containing protein 48-like [Camellia sinensis] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7GU52 | WD_REPEATS_REGION domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology