Basic Information
Locus ID:
nbisL1-mrna-23302
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
heterochromatin assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002230F_pilon | 551157 | 553969 | - | nbisL1-mrna-23302 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 25,356.54 Da | 46.86 | 60.05 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 30 | 164 | 2.02885E-56 | - |
| Pfam | PF00628 | PHD-finger | 148 | 196 | 8.9E-11 | IPR019787 |
| Pfam | PF01426 | BAH domain | 31 | 143 | 1.4E-23 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 138 | 199 | 6.64E-20 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 141 | 4.6E-31 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 210 | 1.0E-20 | IPR013083 |
| SMART | SM00249 | PHD_3 | 148 | 195 | 3.4E-10 | IPR001965 |
| SMART | SM00439 | BAH_4 | 29 | 144 | 1.4E-40 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 29 | 144 | 23.111799 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 146 | 197 | 9.071699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 149 | 194 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 224 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_021685722.1 | chromatin remodeling protein EBS [Hevea brasiliensis] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K9M2 | Chromatin remodeling protein EBS-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology