Basic Information
Locus ID:
nbisL1-mrna-23300
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 10357503 | 10358096 | + | nbisL1-mrna-23300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 22,666.75 Da | 62.40 | 92.44 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 153 | 194 | 2.9E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 196 | 1.5E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 197 | 1.3E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 153 | 193 | 5.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 194 | 12.430266 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68180.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048330342.1 | E3 ubiquitin-protein ligase MPSR1-like [Ziziphus jujuba var. spinosa] | 0 |
| Q3T0W3 | E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067L493 | RING-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_01072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.414 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11978 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1702 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8313 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23300 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10677 |