Basic Information
Locus ID:
nbisL1-mrna-23282
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002230F_pilon | 434614 | 437910 | + | nbisL1-mrna-23282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 58,002.41 Da | 35.53 | 91.72 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 51 | 370 | 1.7E-75 | IPR000490 |
| Pfam | PF07983 | X8 domain | 388 | 458 | 6.5E-21 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 51 | 370 | 1.33E-81 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 381 | 495 | 5.3E-12 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 50 | 377 | 1.4E-107 | - |
| SMART | SM00768 | X8_cls | 387 | 472 | 2.8E-48 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 285 | 298 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11820.2 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_021688386.1 | glucan endo-1,3-beta-glucosidase 1-like [Hevea brasiliensis] | 0 |
| O65399 | Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2P2QM17 | glucan endo-1,3-beta-D-glucosidase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology