Basic Information
Locus ID:
nbisL1-mrna-23281
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 9923867 | 9927445 | - | nbisL1-mrna-23281 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 62,187.97 Da | 42.48 | 91.04 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00298 | ACD_sHsps_p23-like | 440 | 524 | 3.55652E-9 | - |
| Pfam | PF00646 | F-box domain | 8 | 40 | 5.8E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 39 | 8.24E-9 | IPR036047 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 434 | 528 | 2.27E-6 | IPR008978 |
| Gene3D | G3DSA:2.60.40.790 | - | 424 | 527 | 8.4E-6 | IPR008978 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 130 | 376 | 1.3E-16 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_044478656.1 | F-box/kelch-repeat protein At3g23880-like [Mangifera indica] | 0 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 0 | |
| TrEMBL | A0A200PSQ5 | F-box domain OS=Macleaya cordata OX=56857 GN=BVC80_1649g35 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2221 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-18013, nbisL1-mrna-18017, nbisL1-mrna-18018 ... |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8373 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000007l.102 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23281 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10746 |