Basic Information
Locus ID:
nbisL1-mrna-23237
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 9507758 | 9509520 | - | nbisL1-mrna-23237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 41,826.37 Da | 51.72 | 72.76 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 321 | 361 | 1.3E-6 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 320 | 366 | 7.32E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 45 | 113 | 2.58E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 116 | 237 | 3.14E-13 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 313 | 365 | 3.4E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 99 | 255 | 2.4E-19 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 319 | 361 | 10.833521 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_012085679.1 | F-box protein At1g67340 [Jatropha curcas] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L254 | MYND-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology